Posts for the month of October 2010

First raw reads in; Freerk and Morris go to Boston to get GATK running

The first two trio data has been downloaded from BGI. Meanwhile BGI is running the basic analysis, i.e., variant calling on the whole batch. Freerk and Morris went to Boston to learn how to do the same procedure but then using GATK. Hopefully by end of next week they have a running pipeline on the cluster to digest the rest of the pilot data when it comes in and produce VCFs for the GVNL analysis team to sink their teeth into.