Changes between Version 26 and Version 27 of WikiStart


Ignore:
Timestamp:
Sep 15, 2010 4:39:00 PM (14 years ago)
Author:
Morris Swertz
Comment:

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  • WikiStart

    v26 v27  
    11[[BlogList(recent=5, max_size=250, format=float, heading=New blogs)]]
    2 
    32= Welcome to the BBMRI/GvNL Wiki =
    43
     
    98 * See WorkPlan - description of the current planning
    109 * See ReadingMaterials - for recommended powerpoints and papers
    11  * Projects and pipelines:
    12    * SchematicOverview - overview on how the pipelines work together
     10
     11= Projects and pipelines =
     12Work organization based on regenboog project. Clearly there is much connection between all work. See SchematicOverview.
     13
     14== WP 1 Next generation sequencing ==
    1315   * SnpCallingPipeline - description of the variation analysis pipeline (UMCG?)
    1416   * CoverageAnalysisPipeline - description of the coverage analysis pipeline (AMC?)
     
    1618   * MendelianQcPipeline - description of the mendelian check pipeline
    1719   * DeNovoVariationPipeline - finding de novo variations in the GvNL data (LUMC?)
    18    * TrioAwarePhasingPipeline - phasing the individuals using trio information
    19    * TrioAwareVariantDiscoveryPipeline - Trio-aware variant discovery and genotype calling pipeline
     20   * TrioAwareVariantDiscoveryPipeline - Trio-aware variant discovery and genotype calling pipelin
     21
     22== WP2 GWAS pipeline and downstream analysis ==
     23   * TrioAwarePhasingPipeline - phasing the individuals using trio informatione
    2024   * ImputationPipeline - description of the imputation pipeline (VU?,UMCG?)
     25
     26== WP3 Catalogue of biobanks ==
     27   * Hackaton - hackaton in collaboration with NBIC
     28
     29== WP4 Infrastructure ==
     30   * DataManagement - how we use MOLGENIS to track/trace data and tools
     31   * WorkflowTools - how to configure, manage and run pipelines
     32   * BigStorage - how we store the NGS and GWAS data
     33   * BigCompute - how we will enable the pipelines on grids and clusters
    2134= Using this wiki =
    2235As all Wiki pages, this page is editable, this means that you can