Changes between Version 1 and Version 2 of StructuralVariationPipeline


Ignore:
Timestamp:
Nov 3, 2011 11:32:56 AM (12 years ago)
Author:
Leon Mei
Comment:

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  • StructuralVariationPipeline

    v1 v2  
    11This page summaries the SV pipelines used in GoNL
    22
    3 == SV modules ==
     3== SV tasks ==
    44Because of different coverage, the following software are used to call SVs from GoNL data.
    55* Pindel: Eric-Wubbo, Kai
    … …  
    1313* Abyss: Aby
    1414
    15 == Pilot phase ==
     15PCR/chip validation is performed by Wigard, Johan.
     16
     17== Pilot phase (Sep, Oct 2011) ==
    161816 trios, 4 quartets are used for pilot test. Here are the software setup.
    1719
    18 ==== Pindel ====
     20=== Pindel ===
    1921
    2022==== DWAQseq/1-2-3 SV ====
    … …  
    3032==== Abyss ====
    3133
     34== Validation (Oct 2011) ==
     35TBA
    3236
    33 == Production phase ==
     37== Production phase (Nov, Dec 2011)==
    3438UMCG BAMs to be used for production calls.
    3539