Changes between Version 23 and Version 24 of SnpCallingPipeline

Timestamp:

Oct 16, 2010 6:06:09 PM (14 years ago)

Author:

Morris Swertz

Comment:

--

SnpCallingPipeline

@@ -25 +25 @@
                 "reference.fasta"->Split->"chr[1-24].fasta" 
                 dbsnp -> RealignerTargetCreator 
-                label = "Per genome";
+                label = "Per genome (1)";
         }
 
@@ -38 +38 @@
                 "flowcell_lane.2.fq.gz" -> align2 -> alignPE -> MarkDuplicates -> RealignIndelsAndFixMates -> "flowcell_lane.aligned.bam"
                 "realign.intervals" -> RealignIndelsAndFixMates   
-                label = "Per lane/Per chromosome";
+                label = "Per Sample,Lane,Chromosome (750*3*24) ";
         }
 
@@ -50 +50 @@
                 RealignIndelsAndFixMates2 -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
 Filtration -> VCF
-                label = "Per Sample/Per Chromosome";
+                label = "Per Sample,Chromosome (750*24)";
         }