Changes between Version 3 and Version 4 of PipelinePlan


Ignore:
Timestamp:
Sep 6, 2010 8:09:07 PM (11 years ago)
Author:
Morris Swertz
Comment:

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  • PipelinePlan

    v3 v4  
    55We will construct a data processing and analysis pipeline, based on the recent experiences from 1000 Genomes Project, using (where available) existing tools already developed (such as GATK, SAMTOOLS, PICARD).
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    7 See [http://gbic.target.rug.nl/trac/bbmri/raw-attachment/wiki/PipelinePlan/BBMRI-NL%20Genome%20Analysis%20Pipeline%20Manual%202010-08-23.doc Genome Analysis Pipeline document drafted by Morris for individual steps for alignment, quality score recalibration, indel cleaning]. The aim is to compare the outputs (sites called, genotypes called) between this pipeline and BGI.
     7See [http://gbic.target.rug.nl/trac/bbmri/raw-attachment/wiki/PipelinePlan/BBMRI-NL%20Genome%20Analysis%20Pipeline%20Manual%202010-08-23.doc Genome Analysis Pipeline document drafted by Morris and Freerk for individual steps for alignment, quality score recalibration, indel cleaning]. The aim is to compare the outputs (sites called, genotypes called) between this pipeline and BGI.
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    99== Action items for pilot data: (URGENT) ==