Changes between Version 2 and Version 3 of PipelinePlan


Ignore:
Timestamp:
Sep 6, 2010 8:08:54 PM (11 years ago)
Author:
Morris Swertz
Comment:

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  • PipelinePlan

    v2 v3  
    55We will construct a data processing and analysis pipeline, based on the recent experiences from 1000 Genomes Project, using (where available) existing tools already developed (such as GATK, SAMTOOLS, PICARD).
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    7 See Genome Analysis Pipeline document drafted by Morris for individual steps for alignment, quality score recalibration, indel cleaning. The aim is to compare the outputs (sites called, genotypes called) between this pipeline and BGI.
     7See [http://gbic.target.rug.nl/trac/bbmri/raw-attachment/wiki/PipelinePlan/BBMRI-NL%20Genome%20Analysis%20Pipeline%20Manual%202010-08-23.doc Genome Analysis Pipeline document drafted by Morris for individual steps for alignment, quality score recalibration, indel cleaning]. The aim is to compare the outputs (sites called, genotypes called) between this pipeline and BGI.
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    99== Action items for pilot data: (URGENT) ==