Changes between Version 2 and Version 3 of Notes

Timestamp:

Oct 27, 2010 3:02:19 PM (13 years ago)

Author:

freerkvandijk

Comment:

--

Notes

@@ -7 +7 @@
 * Leiden has shark cluster, 108 cpu's
 * If all trios put together for SNP calling etc. have a look for repeated error patterns in Illumina machines
+* Have a look at indel positions after calling, is position correct?
 
 = Action points =
@@ -15 +16 @@
 = Questions =
 * Is QC recalibration also needed for other platforms?
+
+
+
+
+= Pipeline Utrecht =
+* Raw data
+- Split by barcodes/samples
+- Chunking and coversion to fastq
+- Fastq sent to nodes
+- Nodes return sorted .BAMs and statistics
+- Main node merges all data from other nodes
+- Custom pileup script merges (Frans-Paul)
+
+- Ask Frans for info