This page describes the Imputation pipelines developed by the GoNL - Impute team. Please contribute. For help with trac wiki formatting: http://trac.edgewall.org/wiki/WikiFormatting [[br]] All scripts presented here are located in our SVN repository: http://www.bbmriwiki.nl/svn/imputation [[br]] Minutes of our Team Calls: [[http://www.bbmriwiki.nl/wiki/Imputations/Minutes]] == Contributors and Teams == * UMC Groningen: Alexandros Kanterakis alexandros.kanterakis@gmail.com == Study data == == Reference data == == Pre processing == == Quality metrics == == Complete pipelines == == Results == == References == == See also == * An older version of the imputation pipeline developed mainly by Harm-Jan and Lude Franke: [[ImputationPipeline_old]] it uses the [[ImputationTool]] for study / reference normalization. * SVN repository: http://www.bbmriwiki.nl/svn/imputation * http://gettinggeneticsdone.blogspot.com/2010/04/probabel-r-package-for-gwas-data.html ProbABEL - R package for GWAS data imputation. http://www.biomedcentral.com/1471-2105/11/134 http://mga.bionet.nsc.ru/~yurii/ABEL/GenABEL/ an R library for Genome-wide association analysis. * Impute2: http://mathgen.stats.ox.ac.uk/impute/impute_v2.html * http://gettinggeneticsdone.blogspot.com/2010/04/probabel-r-package-for-gwas-data.html ProbABEL - R package for GWAS data imputation. http://www.biomedcentral.com/1471-2105/11/134 http://mga.bionet.nsc.ru/~yurii/ABEL/GenABEL/ an R library for Genome-wide association analysis.