= Imputation pipeline =

There are at the moment two collaborating initiatives:

 * VU: Mathijs Kattenberg and Joukejan Hottenga using IMPUTE
 * UMCG: Lude Franke, Harm-Jan Westra, George Byelas, Morris Swertz using Beagle

The objective is to bring these pipelines into the same space so they can be properly compared and optimized.

TODO: describe the protocols here;

== IMPUTE pipeline ==

TODO: paste shell script descriptions of each step.

== BEABLE pipeline ==

TODO: paste shell script descriptions of each step