Version 1 (modified by 8 years ago) (diff) | ,
---|
v2.1.0 General info
Updated pipeline with new exon track, read more on the gitlab repository.
Gitlab repository
https://git.lumc.nl/rp3/RNA-seq-pipeline/commits/v2.1.0
Sample count
Eventually all samples will be analyzed using this version.
- Started out with 622 NTR samples.
Database
https://picas.grid.sara.nl:6984/_utils/database.html?rp3_analysis
Views
Several views are created and are ready to extract data from the database.
Outputs
To get a json object with all the locations of the output so far with pipeline v2.1.0 use curl to get the v210_outputs view:
curl -X GET https://picas.grid.sara.nl:6984/rp3_analysis/_design/v2.1.0/_view/outputs -k -u username
Statistics and QC
For the run statistics and qc use the 'statistics' view:
https://picas.grid.sara.nl:6984/rp3_analysis/_design/v2.1.0/_view/statistics
Issues
- 4 samples turned out to share 2 barcodes. Removed until re-sequenced.
Resequenced: AD2D3NACXX-7-9 NTR08323 AD2D3NACXX-7-9 NT0027701 BC2B59ACXX-7-14 NTR05309 BC2B59ACXX-7-14 NTR09799