Minutes of SV skype call on October 13rd

Participants

Victor, Lennart, Najaf, Aby, Leon, Laurent, Abdel

Minutes

Pilot phase SV detection run

• BreakSeq?: Slavik is working on the reference set using hg19 since the tool only supports hg18 now.
• BreakDancer?: Jayne/Joep? made some parameter changes on the pipeline installed at Groningen cluster. Will make new SV calls for the pilot dataset.
• Dindel: Laurent finished the SV call and is working now on the filtering part. Aim to deliver the result next week.
• GenomeStrip?: Bob is continuing on the filtering part. Aim to deliver the result next week.

Pilot phase validation

Full GoNL dataset