Changes between Version 35 and Version 36 of SnpCallingPipeline


Ignore:
Timestamp:
Oct 17, 2010 2:06:58 PM (13 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline

    v35 v36  
    55Authors: Freerk van Dijk, Morris Swertz
    66
    7 Based on Broad pipeline.
    8 
    9 To perform the analysis as fast and good as possible the pipeline has been divided into several small processes. These processes are all numbered and can be found in figure 1 & 2 in the appendix. The processes including commands, input and output files are described below, starting with pre-alignment.
     7Based on [http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Broad GATK pipeline].
     8
     9To perform the analysis as fast and good as possible the pipeline has been divided into several small processes. These processes are all numbered and can be found below, including commands, input and output files starting with pre-alignment and ending with variation calling & filtering.
    1010== Simplified Overview ==
    1111