Changes between Version 6 and Version 7 of DataManagement


Ignore:
Timestamp:
May 12, 2011 9:19:16 AM (13 years ago)
Author:
laurent
Comment:

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  • DataManagement

    v6 v7  
    11This page is work-in-progress regarding the data Management of the GoNL.
     2
     3== UMCG SFTP ==
     4=== raw_data ===
     5Contains all the data coming from BGI, including their variant calls.
     6* /fastq
     7**  A4 trio fasta files
     8*/hg18
     9** Pilot snp, cnv, indel, stat files sent by BGI at the beginning of 2011
     10* /hg19
     11** A4 trio bam, snp, cnv files sent by BGI in April 2011
     12
     13=== resources ===
     14* GoNL resources tarball (Thanks Freerk!)
     15
     16=== results ===
     17Here is all the data that has gone through any kind processing at UMCG
     18*/bam/umcg/
     19** A4 trio complete bam files
     20** pilot chromosomes 19, 20, X, Y, MT bam files
     21* /snp/hg18
     22** Pilot cleaned up VCF files from the BGI on hg18(sorted, updated to VCF4.0)
     23* /snp/hg19
     24** Pilot initial unfiltered calls from UMCG
     25** Lifted-over files from BGI
    226
    327== Millipede File Structure ==