== UMCG SFTP (application20.target.rug.nl) ==
=== raw_data ===
Contains all the data coming from BGI, including their variant calls.
* /fastq
**  A4 trio fasta files
*/hg18
** Pilot snp, cnv, indel, stat files sent by BGI at the beginning of 2011
* /hg19
** A4 trio bam, snp, cnv files sent by BGI in April 2011

=== resources ===
* GoNL resources tarball (Thanks Freerk!)

=== results ===
Here is all the data that has gone through any kind processing at UMCG
*/bam/umcg/
** A4 trio complete bam files
** pilot chromosomes 19, 20, X, Y, MT bam files
* /snp/hg18
** Pilot cleaned up VCF files from the BGI on hg18(sorted, updated to VCF4.0)
* /snp/hg19
** Pilot initial unfiltered calls from UMCG
** Lifted-over files from BGI