= ~/gcc/groups/gonl =
Directory structure of data management. On the Groningen cluster that would be target/gpfs2/gcc/groups/gonl  Permission to read by gonl group, some folders also write.

 * /tools
   * symlink to the /gcc/tools folder (except the folders you don't have access too)
 * /resources
   * symlink to the /gcc/resources folder (except the folders you don't have access too)
 * /home
   * one folder per member of this group
 * /general
   * presentations, publications, other stuff
 * /projects
   * /batchX
     * /rawdata
       * here is a list of fq.gz files
     * /results
       * /alignment
         * here is a list of bam files
       * /stats
         * here is one file per QC tool
       * /snp
         * here is one vcf file per analysis run
     * /logs
     * /intermediate_results
       * whatever is needed, will be empty at end of project
   * /gwas_data
     * /rawdata
       * original provided plink or genomestudio
     * /results
       * here the cleaned up genotypes in agreed upon format
     * /logs
   * /groningen_immunochip
     * /rawdata
     * /results
   * /pilot
     * /rawdata
       * /alignment
         * symlinks to the raw alignments used -> /first_batch/rawdata/some.aligned.cleaned.bam
     * /result
       * /snp
       * /indel
       * /cnv
     * logs
   * bgi
     * batchX: contains all the analysis data from BGI. Please see...for more information