Changes between Version 10 and Version 11 of DataConcordance

Timestamp:

Apr 21, 2011 4:32:58 PM (13 years ago)

Author:

laurent

Comment:

--

DataConcordance

@@ -101 +101 @@
 The graph below shows a preliminary analysis of the "types" of discordance observed. An important caveat has to be taken into account: VCFTools only reports sites where the alleles perfectly match. This means that all monomorphic sites in one dataset that are polymorphic in the other will not appear. This was especially problematic since we compared each sequenced sample separately against the whole Immunochip dataset. As a result almost all homozygous reference sites in the sequence data were not reported by VCFTools. All the discordant sites that did not have perfectly matching alleles are reported below as 'unknown' as it has yet to be investigated what discordance "type" they belong to.
 
-[[Image(pilot.immuno.seq.gen.concordance.test.jpg)]
+[[Image(pilot.immuno.seq.gen.concordance.test.jpg)]]
 
 == BGI / Immunochip ==