Changes between Version 53 and Version 54 of BigCompute


Ignore:
Timestamp:
Jan 14, 2011 4:49:46 PM (13 years ago)
Author:
Barbera van Schaik
Comment:

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  • BigCompute

    v53 v54  
    3535* PicardQC (''partly done'') - pe04b-picardQC.ftl. Didn't get the R environment up and running yet, so the .pdf .hist and .bamindexstats can not be produced yet. Will continue with the other components and fix this later. Attachment contains info about the required R packages.
    3636* !GatkGenerateIntervalFile (''done'') - see e-mail Freerk on Dec 13, 2010
    37 * !ReAlign (''done'') - pe06-realign.ftl
     37* !ReAlign (''in progress'') - pe06-realign.ftl. Fails, need to discuss this with Freerk
    3838* !FixMates (''in progress'') - pe07-fixmates.ftl
     39* !GatkCovariates (''in progress'') - pe08-covariates-before.ftl, pe11-covariates-after.ftl
    3940
    4041'''To be implemented'''