= v2.1.0 General info =

Updated pipeline with new exon track, read more on the gitlab repository.

== Gitlab repository ==

https://git.lumc.nl/rp3/RNA-seq-pipeline/commits/v2.1.0

== Sample count ==

Eventually all samples will be analyzed using this version.

 * Started out with 622 NTR samples.

== Database ==

https://picas.grid.sara.nl:6984/_utils/database.html?rp3_analysis

== Views ==

Several views are created and are ready to extract data from the database.

''' Outputs '''

To get a json object with all the locations of the output so far with
pipeline v2.1.0 use curl to get the v210_outputs view:

{{{
curl -X GET https://picas.grid.sara.nl:6984/rp3_analysis/_design/v2.1.0/_view/outputs -k -u username
}}}

''' Statistics and QC '''

For the run statistics and qc use the 'statistics' view:

{{{
https://picas.grid.sara.nl:6984/rp3_analysis/_design/v2.1.0/_view/statistics
}}}

== Issues ==

 * 4 samples turned out to share 2 barcodes. Removed until re-sequenced. 
{{{
Resequenced:
AD2D3NACXX-7-9  NTR08323
AD2D3NACXX-7-9  NT0027701
BC2B59ACXX-7-14 NTR05309
BC2B59ACXX-7-14 NTR09799
}}}