= rp3_rna_run_20131004 5ddcae7 = This are the samples associated with freeze 1. == Sample count == 2270 samples + 30 redos + 30 merged originals_redos == Errors == For 64 samples the pipeline was rerun due to missing files (Mainly BAM), see [http://www.bbmriwiki.nl/wiki/BIOS_Pipeline/6d401ed 6d401ed] for these. == Summarized output files: == * JSON database dump of run database: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1.json * Tab-delimited file of QC values (contains all sample statistics from run database & sample database): srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_stats.tsv * Gene counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_gene_counts.tar.gz * Exon counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_exon_counts.tar.gz * Transcript counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_transript_counts.tar.gz