Changes between Initial Version and Version 1 of BIOS_Pipeline/5ddcae7


Ignore:
Timestamp:
Sep 19, 2016 4:56:25 PM (8 years ago)
Author:
jamverlouw
Comment:

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  • BIOS_Pipeline/5ddcae7

    v1 v1  
     1= rp3_rna_run_20131004 5ddcae7 =
     2
     3This are the samples associated with freeze 1.
     4
     5== Sample count ==
     62270 samples + 30 redos + 30 merged originals_redos
     7
     8== Errors ==
     9For 64 samples the pipeline was rerun due to missing files (Mainly BAM), see [http://www.bbmriwiki.nl/wiki/BIOS_Pipeline/6d401ed 6d401ed] for these.
     10
     11== Summarized output files: ==
     12
     13* JSON database dump of run database: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1.json
     14
     15* Tab-delimited file of QC values (contains all sample statistics from run database & sample database): srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_stats.tsv
     16
     17* Gene counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_gene_counts.tar.gz
     18
     19* Exon counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_exon_counts.tar.gz
     20
     21* Transcript counts of all samples: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/production/summaries/run_1_transript_counts.tar.gz